Senior researcher at INRAE
tristan.mary-huard@agroparistech.fr
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Département MMIP |
UMR de Génétique Végétale |
Research interests
- Statistical Learning
- Model selection in classification
- Variable aggregation, variable selection
- Resampling-based model selection
- Statistical genetics
- Genome wide association studies
- Genomic selection
- Meta-analysis
- Accounting for structure and admixture in genetics studies
Codes and packages
- Joint inference of Fst distance and history tree
The HFst R package is available here:
Here are a short tutorial along with some datasets to guide you through the main functions. The two datasets correspond to allelic count data for the populations of the 1KG dataset, for biallelic markers on Chromosomes 21 and 22.
- Detection of genomic regions under selection
The fst4pg R package is available here:
It requires the installation of the following package:
Here is a short tutorial to guide you through the main functions :
- Querying Composed Hypotheses
Here are the R codes used in the manuscript, along with a short tutorial:
Participation to workshops
- Statistical modeling for QTL detection
Formation INRA Association Studies & Genome Wide Selection (Le Moulon, mai 2013)
- Multiple testing slides
Ecole INRA PEPI “De la production à l'analyse des données Next Generation Sequencing” (Ecully, Janvier 2012)
- Differential analysis and experimental design in proteomics slides
Formation CNRS-INSERM-INRA “Publier et échanger les résultats des analyses protéomiques” (La Grande Motte, Avril 2009)
- Méthodes statistiques pour l'analyse des puces à ADN
Atelier de formation INSERM “Les Biopuces” (Ecole Normale Supérieure de Paris, Février, de 2004 à 2007)
- A Short Course on Microarray Data
Ecole thématique du CNRS “High-throughput methods of molecular biology in the environmental sciences” (Station Biologique de Roscoff, Septembre 2005)